PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma48g00330.1
Common NameZOSMA_48G00330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 397aa    MW: 40712.9 Da    PI: 5.9023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma48g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12200245555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zosma48g00330.1 200 HSIAERLRRERIADRMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 245
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.87E-13193249No hitNo description
SuperFamilySSF474591.07E-16193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.352195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16197252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9200245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQQPTSTEMQ QRDHYEPFTT NDDFLDQMLA NIPSWPDLST SDGLKPPWDM PTQGGDDSVL  60
LASRLRQHQI SGGVGGGGDG GGPSKAVMGA LQQVIMYADS TLGNGAPDSG DADASNAFKS  120
PNLSGGGDSI YNGFGASLSR VPGQQPFQSH TQVGGGGVQS FVAQAGAGMG QSQSASAGSG  180
GTAPPRQRVR ARRGQATDPH SIAERLRRER IADRMKALQE LVPNANKTDK ASMLDEIIDY  240
VKFLQLQVKV LSVSRLGGAA AVAPLVADMS SNGGGGGRSS ATGGNENNTL AVTEHQVAKL  300
MEEDMGSAMQ YLQGKGLCLM PISLASAIST ATGHPRTTTI APQQHNNNAD GPSSPNLSVL  360
TAQSGMAGDG DGSRPAPAQG SGGKDNSKNI GSISNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445082.11e-115PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG97e-85BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0K9NZI20.0A0A0K9NZI2_Z
STRINGPOPTR_0018s11800.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-71LJRHL1-like 1